U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ddx23 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [ Neolamprologus brichardi ]

Gene ID: 102792000, updated on 10-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
ddx23
Gene description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
See related
Ensembl:ENSNBRG00000022928
Gene type
protein coding
RefSeq status
MODEL
Organism
Neolamprologus brichardi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Lamprologini; Neolamprologus
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ddx23 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
101 current NeoBri1.0 (GCF_000239395.1) Unplaced Scaffold NW_006272045.1 (4150761..4160089)

NW_006272045.1Genomic Context describing neighboring genes Neighboring gene DNA primase subunit 1 Neighboring gene rho-related GTP-binding protein Rho6-like Neighboring gene calcium channel, voltage-dependent, beta 3a Neighboring gene adenylate cyclase type 6-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_006272045 Unplaced Scaffold Reference NeoBri1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable ATP-dependent RNA helicase DDX23

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Neolamprologus brichardi Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NeoBri1.0 Primary Assembly

Genomic

  1. NW_006272045.1 Reference NeoBri1.0 Primary Assembly

    Range
    4150761..4160089
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006796509.2 → XP_006796572.1  probable ATP-dependent RNA helicase DDX23

    UniProtKB/TrEMBL
    A0A3Q4N982
    Related
    ENSNBRP00000030144.1, ENSNBRT00000030912.1
    Conserved Domains (4) summary
    TIGR02473
    Location:288 → 358
    flagell_FliJ; flagellar export protein FliJ
    smart00487
    Location:392 → 628
    DEXDc; DEAD-like helicases superfamily
    cd00268
    Location:379 → 615
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
    pfam00271
    Location:636 → 745
    Helicase_C; Helicase conserved C-terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.