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LOC102788669 probable ATP-dependent RNA helicase DDX41 [ Neolamprologus brichardi ]

Gene ID: 102788669, updated on 14-Dec-2023

Summary

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Gene symbol
LOC102788669
Gene description
probable ATP-dependent RNA helicase DDX41
See related
Ensembl:ENSNBRG00000015087
Gene type
protein coding
RefSeq status
MODEL
Organism
Neolamprologus brichardi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Lamprologini; Neolamprologus
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Genomic context

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See LOC102788669 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
101 current NeoBri1.0 (GCF_000239395.1) Unplaced Scaffold NW_006272003.1 (9871414..9879722)

NW_006272003.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 193 member B Neighboring gene MAX dimerization protein 3 Neighboring gene atonal bHLH transcription factor 1b Neighboring gene docking protein 3 Neighboring gene unc-5 netrin receptor A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006272003 Unplaced Scaffold Reference NeoBri1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX41

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neolamprologus brichardi Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NeoBri1.0 Primary Assembly

Genomic

  1. NW_006272003.1 Reference NeoBri1.0 Primary Assembly

    Range
    9871414..9879722
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006781625.1 → XP_006781688.1  probable ATP-dependent RNA helicase DDX41

    UniProtKB/TrEMBL
    A0A3Q4HQI8
    Related
    ENSNBRP00000019612.1, ENSNBRT00000020128.1
    Conserved Domains (3) summary
    smart00487
    Location:188 → 401
    DEXDc; DEAD-like helicases superfamily
    cd00268
    Location:175 → 389
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
    pfam00271
    Location:410 → 519
    Helicase_C; Helicase conserved C-terminal domain
Nucleotide Protein
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