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ddx43 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [ Neolamprologus brichardi ]

Gene ID: 102788576, updated on 10-Mar-2024

Summary

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Gene symbol
ddx43
Gene description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 43
See related
Ensembl:ENSNBRG00000010942
Gene type
protein coding
RefSeq status
MODEL
Organism
Neolamprologus brichardi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Lamprologini; Neolamprologus
Orthologs
human zebrafish all
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Genomic context

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See ddx43 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
101 current NeoBri1.0 (GCF_000239395.1) Unplaced Scaffold NW_006272006.1 (6551571..6564693)

NW_006272006.1Genomic Context describing neighboring genes Neighboring gene cannabinoid receptor interacting protein 1b Neighboring gene potassium voltage-gated channel, KQT-like subfamily, member 5a Neighboring gene uncharacterized LOC118453721 Neighboring gene cyclic GMP-AMP synthase a Neighboring gene eukaryotic translation elongation factor 1 alpha 1a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006272006 Unplaced Scaffold Reference NeoBri1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX43

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neolamprologus brichardi Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NeoBri1.0 Primary Assembly

Genomic

  1. NW_006272006.1 Reference NeoBri1.0 Primary Assembly

    Range
    6551571..6564693
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006783554.2 → XP_006783617.1  probable ATP-dependent RNA helicase DDX43

    UniProtKB/TrEMBL
    A0A3Q4GY94
    Related
    ENSNBRP00000014251.1, ENSNBRT00000014638.1
    Conserved Domains (4) summary
    smart00487
    Location:286 → 484
    DEXDc; DEAD-like helicases superfamily
    cd00079
    Location:492 → 619
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd00105
    Location:90 → 149
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd00268
    Location:274 → 477
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
Nucleotide Protein
Heading Accession and Version

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