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skic2 SKI2 subunit of superkiller complex [ Neolamprologus brichardi ]

Gene ID: 102786151, updated on 10-Mar-2024

Summary

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Gene symbol
skic2
Gene description
SKI2 subunit of superkiller complex
See related
Ensembl:ENSNBRG00000018650
Gene type
protein coding
RefSeq status
MODEL
Organism
Neolamprologus brichardi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Lamprologini; Neolamprologus
Also known as
skiv2l
Orthologs
human zebrafish all
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Genomic context

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See skic2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
101 current NeoBri1.0 (GCF_000239395.1) Unplaced Scaffold NW_006272013.1 (10617714..10636903, complement)

NW_006272013.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 268 Neighboring gene proline-rich transmembrane protein 1 Neighboring gene zinc finger and BTB domain-containing protein 12-like Neighboring gene negative elongation factor complex member E

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006272013 Unplaced Scaffold Reference NeoBri1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Ski complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
helicase SKI2W
Names
SKI2 homolog, superkiller viralicidic activity 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neolamprologus brichardi Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NeoBri1.0 Primary Assembly

Genomic

  1. NW_006272013.1 Reference NeoBri1.0 Primary Assembly

    Range
    10617714..10636903 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006788063.1 → XP_006788126.1  helicase SKI2W

    UniProtKB/TrEMBL
    A0A3Q4N174
    Related
    ENSNBRP00000024449.1, ENSNBRT00000025092.1
    Conserved Domains (5) summary
    smart00490
    Location:632 → 712
    HELICc; helicase superfamily c-terminal domain
    smart00487
    Location:310 → 490
    DEXDc; DEAD-like helicases superfamily
    pfam00270
    Location:319 → 466
    DEAD; DEAD/DEAH box helicase
    pfam08148
    Location:1068 → 1234
    DSHCT; DSHCT (NUC185) domain
    pfam13234
    Location:769 → 1041
    rRNA_proc-arch; rRNA-processing arch domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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