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LOC102778855 ATP-dependent RNA helicase DDX3Y-like [ Neolamprologus brichardi ]

Gene ID: 102778855, updated on 14-Dec-2023

Summary

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Gene symbol
LOC102778855
Gene description
ATP-dependent RNA helicase DDX3Y-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Neolamprologus brichardi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Lamprologini; Neolamprologus
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Genomic context

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See LOC102778855 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current NeoBri1.0 (GCF_000239395.1) Unplaced Scaffold NW_006272180.1 (18351..33419, complement)

NW_006272180.1Genomic Context describing neighboring genes Neighboring gene dTDP-D-glucose 4,6-dehydratase-like Neighboring gene G protein-coupled receptor 180 Neighboring gene putative ATP-dependent RNA helicase an3 Neighboring gene sodium/myo-inositol cotransporter-like Neighboring gene prostaglandin F2 receptor inhibitor b

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006272180 Unplaced Scaffold Reference NeoBri1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in gamete generation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase DDX3Y-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neolamprologus brichardi Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NeoBri1.0 Primary Assembly

Genomic

  1. NW_006272180.1 Reference NeoBri1.0 Primary Assembly

    Range
    18351..33419 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035914991.1 → XP_035770884.1  ATP-dependent RNA helicase DDX3Y-like isoform X1

    Conserved Domains (2) summary
    cd18787
    Location:312 → 459
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd18051
    Location:53 → 307
    DEADc_DDX3; DEAD-box helicase domain of DEAD box protein 3

  2. XM_035914992.1 → XP_035770885.1  ATP-dependent RNA helicase DDX3Y-like isoform X2

    Conserved Domains (2) summary
    cd18787
    Location:312 → 442
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd18051
    Location:53 → 307
    DEADc_DDX3; DEAD-box helicase domain of DEAD box protein 3
Nucleotide Protein
Heading Accession and Version

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