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ddx42 DEAD (Asp-Glu-Ala-Asp) box helicase 42 [ Neolamprologus brichardi ]

Gene ID: 102777021, updated on 10-Mar-2024

Summary

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Gene symbol
ddx42
Gene description
DEAD (Asp-Glu-Ala-Asp) box helicase 42
See related
Ensembl:ENSNBRG00000004466
Gene type
protein coding
RefSeq status
MODEL
Organism
Neolamprologus brichardi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Lamprologini; Neolamprologus
Orthologs
human zebrafish all
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Genomic context

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See ddx42 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
101 current NeoBri1.0 (GCF_000239395.1) Unplaced Scaffold NW_006272098.1 (1042726..1051023)

NW_006272098.1Genomic Context describing neighboring genes Neighboring gene RUN domain containing 3Aa Neighboring gene uncharacterized LOC102775763 Neighboring gene ring finger protein 113A Neighboring gene STE20 related adaptor alpha Neighboring gene LIM domain containing 2 Neighboring gene mitogen-activated protein kinase kinase kinase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006272098 Unplaced Scaffold Reference NeoBri1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase DDX42

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neolamprologus brichardi Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NeoBri1.0 Primary Assembly

Genomic

  1. NW_006272098.1 Reference NeoBri1.0 Primary Assembly

    Range
    1042726..1051023
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006803016.2 → XP_006803079.1  ATP-dependent RNA helicase DDX42

    UniProtKB/TrEMBL
    A0A3Q4MAK3
    Related
    ENSNBRP00000005694.1, ENSNBRT00000005863.1
    Conserved Domains (3) summary
    PRK10590
    Location:253 → 666
    PRK10590; ATP-dependent RNA helicase RhlE; Provisional
    cd00268
    Location:254 → 458
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
    pfam00271
    Location:481 → 592
    Helicase_C; Helicase conserved C-terminal domain
Nucleotide Protein
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Gene LinkOut

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