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SPTLC2 serine palmitoyltransferase long chain base subunit 2 [ Myotis davidii ]

Gene ID: 102764240, updated on 19-Jun-2024

Summary

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Gene symbol
SPTLC2
Gene description
serine palmitoyltransferase long chain base subunit 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Myotis davidii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
Orthologs
human mouse all
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Genomic context

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See SPTLC2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
101 current ASM32734v1 (GCF_000327345.1) Unplaced Scaffold NW_006383013.1 (3335134..3400215, complement)

NW_006383013.1Genomic Context describing neighboring genes Neighboring gene activator of HSP90 ATPase activity 1 Neighboring gene isthmin 2 Neighboring gene alkB homolog 1, histone H2A dioxygenase Neighboring gene SRA stem-loop interacting RNA binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006383013.1 Unplaced Scaffold Reference ASM32734v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of serine palmitoyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine palmitoyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Myotis davidii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM32734v1

Genomic

  1. NW_006383013.1 Reference ASM32734v1

    Range
    3335134..3400215 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015558053.1 → XP_015413539.1  serine palmitoyltransferase 2

    Conserved Domains (2) summary
    PLN02483
    Location:2 → 475
    PLN02483; serine palmitoyltransferase
    COG0156
    Location:50 → 465
    BioF; 7-keto-8-aminopelargonate synthetase or related enzyme [Coenzyme transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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