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PIGV phosphatidylinositol glycan anchor biosynthesis class V [ Leptonychotes weddellii (Weddell seal) ]

Gene ID: 102741702, updated on 10-Mar-2024

Summary

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Gene symbol
PIGV
Gene description
phosphatidylinositol glycan anchor biosynthesis class V
Gene type
protein coding
RefSeq status
MODEL
Organism
Leptonychotes weddellii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Leptonychotes
Orthologs
human mouse all
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Genomic context

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See PIGV in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current LepWed1.0 (GCF_000349705.1) Unplaced Scaffold NW_006384105.1 (477045..486252, complement)

NW_006384105.1Genomic Context describing neighboring genes Neighboring gene GPN-loop GTPase 2 Neighboring gene zinc finger DHHC-type palmitoyltransferase 18 Neighboring gene stratifin Neighboring gene AT-rich interaction domain 1A Neighboring gene ribosomal protein S6 kinase A1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006384105 Unplaced Scaffold Reference LepWed1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,6-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycolipid mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of mannosyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GPI mannosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Leptonychotes weddellii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepWed1.0 Primary Assembly

Genomic

  1. NW_006384105.1 Reference LepWed1.0 Primary Assembly

    Range
    477045..486252 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031034759.1 → XP_030890619.1  GPI mannosyltransferase 2

    UniProtKB/TrEMBL
    A0A2U3Y7A9
    Conserved Domains (1) summary
    pfam04188
    Location:8 → 493
    Mannosyl_trans2; Mannosyltransferase (PIG-V)

  2. XM_031034760.1 → XP_030890620.1  GPI mannosyltransferase 2

    UniProtKB/TrEMBL
    A0A2U3Y7A9
    Conserved Domains (1) summary
    pfam04188
    Location:8 → 493
    Mannosyl_trans2; Mannosyltransferase (PIG-V)

  3. XM_031034758.1 → XP_030890618.1  GPI mannosyltransferase 2

    UniProtKB/TrEMBL
    A0A2U3Y7A9
    Conserved Domains (1) summary
    pfam04188
    Location:8 → 493
    Mannosyl_trans2; Mannosyltransferase (PIG-V)

  4. XM_006739554.2 → XP_006739617.1  GPI mannosyltransferase 2

    UniProtKB/TrEMBL
    A0A2U3Y7A9
    Conserved Domains (1) summary
    pfam04188
    Location:8 → 493
    Mannosyl_trans2; Mannosyltransferase (PIG-V)
Nucleotide Protein
Heading Accession and Version

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