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OXCT1 3-oxoacid CoA-transferase 1 [ Leptonychotes weddellii (Weddell seal) ]

Gene ID: 102737586, updated on 10-Mar-2024

Summary

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Gene symbol
OXCT1
Gene description
3-oxoacid CoA-transferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Leptonychotes weddellii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Leptonychotes
Orthologs
human mouse all
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Genomic context

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See OXCT1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
101 current LepWed1.0 (GCF_000349705.1) Unplaced Scaffold NW_006383858.1 (584714..707865)

NW_006383858.1Genomic Context describing neighboring genes Neighboring gene thymosin beta-4, Y-chromosomal pseudogene Neighboring gene F-box protein 4 Neighboring gene RAB7A interacting MON1-CCZ1 complex subunit 1 Neighboring gene phosphatidylinositol specific phospholipase C X domain containing 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006383858 Unplaced Scaffold Reference LepWed1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables succinyl-CoA:3-oxo-acid CoA-transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ketone body catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Leptonychotes weddellii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepWed1.0 Primary Assembly

Genomic

  1. NW_006383858.1 Reference LepWed1.0 Primary Assembly

    Range
    584714..707865
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006736961.2 → XP_006737024.1  succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial

    UniProtKB/TrEMBL
    A0A2U3XZY2
    Conserved Domains (2) summary
    COG1788
    Location:41 → 274
    AtoD; Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid transport and metabolism]
    cl00339
    Location:300 → 508
    SugarP_isomerase; Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose ...
Nucleotide Protein
Heading Accession and Version

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