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CNTN1 contactin 1 [ Leptonychotes weddellii (Weddell seal) ]

Gene ID: 102735100, updated on 10-Mar-2024

Summary

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Gene symbol
CNTN1
Gene description
contactin 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Leptonychotes weddellii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Leptonychotes
Orthologs
human mouse all
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Genomic context

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See CNTN1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
101 current LepWed1.0 (GCF_000349705.1) Unplaced Scaffold NW_006384206.1 (306048..701968, complement)

NW_006384206.1Genomic Context describing neighboring genes Neighboring gene PDZ domain-containing RING finger protein 4-like Neighboring gene U6 spliceosomal RNA Neighboring gene non-histone chromosomal protein HMG-17 pseudogene Neighboring gene elongation factor 1-alpha 1 pseudogene Neighboring gene small nucleolar RNA U3 Neighboring gene uncharacterized LOC115943292

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006384206 Unplaced Scaffold Reference LepWed1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Leptonychotes weddellii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepWed1.0 Primary Assembly

Genomic

  1. NW_006384206.1 Reference LepWed1.0 Primary Assembly

    Range
    306048..701968 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031035635.1 → XP_030891495.1  contactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A2U3Y9X6
    Conserved Domains (7) summary
    cd05727
    Location:134 → 230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
    cd05851
    Location:241 → 328
    Ig3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1
    cd05852
    Location:429 → 501
    Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
    cd00063
    Location:610 → 697
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd04970
    Location:520 → 601
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    pfam00041
    Location:811 → 892
    fn3; Fibronectin type III domain
    cl11960
    Location:40 → 132
    Ig; Immunoglobulin domain

  2. XM_006740335.2 → XP_006740398.1  contactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A2U3Y9X6
    Conserved Domains (7) summary
    cd05727
    Location:134 → 230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
    cd05851
    Location:241 → 328
    Ig3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1
    cd05852
    Location:429 → 501
    Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
    cd00063
    Location:610 → 697
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd04970
    Location:520 → 601
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    pfam00041
    Location:811 → 892
    fn3; Fibronectin type III domain
    cl11960
    Location:40 → 132
    Ig; Immunoglobulin domain

  3. XM_006740337.2 → XP_006740400.1  contactin-1 isoform X2

    UniProtKB/TrEMBL
    A0A2U3Y9L4
    Conserved Domains (6) summary
    cd05851
    Location:241 → 328
    IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
    cd00096
    Location:42 → 46
    Ig; Ig strand A [structural motif]
    cd04970
    Location:503 → 602
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    cd05727
    Location:142 → 230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
    cd05852
    Location:413 → 501
    Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
    cl11960
    Location:40 → 134
    Ig; Immunoglobulin domain
Nucleotide Protein
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