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GNPTAB N-acetylglucosamine-1-phosphate transferase subunits alpha and beta [ Leptonychotes weddellii (Weddell seal) ]

Gene ID: 102729713, updated on 10-Mar-2024

Summary

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Gene symbol
GNPTAB
Gene description
N-acetylglucosamine-1-phosphate transferase subunits alpha and beta
Gene type
protein coding
RefSeq status
MODEL
Organism
Leptonychotes weddellii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Leptonychotes
Orthologs
human mouse all
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Genomic context

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See GNPTAB in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
101 current LepWed1.0 (GCF_000349705.1) Unplaced Scaffold NW_006383327.1 (872246..920257, complement)

NW_006383327.1Genomic Context describing neighboring genes Neighboring gene myosin binding protein C1 Neighboring gene choline phosphotransferase 1 Neighboring gene synaptonemal complex protein 3 Neighboring gene DNA damage regulated autophagy modulator 1 Neighboring gene WASH complex subunit 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006383327 Unplaced Scaffold Reference LepWed1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-glycan processing to lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-acetylglucosamine-1-phosphotransferase subunits alpha/beta
Names
N-acetylglucosamine-1-phosphate transferase alpha and beta subunits

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Leptonychotes weddellii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepWed1.0 Primary Assembly

Genomic

  1. NW_006383327.1 Reference LepWed1.0 Primary Assembly

    Range
    872246..920257 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031025910.1 → XP_030881770.1  N-acetylglucosamine-1-phosphotransferase subunits alpha/beta

    UniProtKB/TrEMBL
    A0A7F8QKN6
    Conserved Domains (7) summary
    pfam00066
    Location:364 → 397
    Notch; LNR domain
    pfam06464
    Location:627 → 740
    DMAP_binding; DMAP1-binding Domain
    pfam11380
    Location:250 → 357
    Stealth_CR2; Stealth protein CR2, conserved region 2
    pfam17101
    Location:1 → 29
    Stealth_CR1; Stealth protein CR1, conserved region 1
    pfam17102
    Location:884 → 932
    Stealth_CR3; Stealth protein CR3, conserved region 3
    pfam17103
    Location:1067 → 1123
    Stealth_CR4; Stealth protein CR4, conserved region 4
    pfam18440
    Location:146 → 233
    GlcNAc-1_reg; Putative GlcNAc-1 phosphotransferase regulatory domain
Nucleotide Protein
Heading Accession and Version

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