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OGDH oxoglutarate dehydrogenase [ Leptonychotes weddellii (Weddell seal) ]

Gene ID: 102727715, updated on 10-Mar-2024

Summary

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Gene symbol
OGDH
Gene description
oxoglutarate dehydrogenase
Gene type
protein coding
RefSeq status
MODEL
Organism
Leptonychotes weddellii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Leptonychotes
Orthologs
human mouse all
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Genomic context

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See OGDH in Genome Data Viewer
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
101 current LepWed1.0 (GCF_000349705.1) Unplaced Scaffold NW_006383796.1 (445283..515766)

NW_006383796.1Genomic Context describing neighboring genes Neighboring gene transmembrane emp24 domain-containing protein 4-like Neighboring gene DEAD-box helicase 56 Neighboring gene transmembrane emp24 domain-containing protein 4-like Neighboring gene zinc finger MIZ-type containing 2 Neighboring gene uncharacterized LOC102729140

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006383796 Unplaced Scaffold Reference LepWed1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxoglutarate dehydrogenase (succinyl-transferring) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables thiamine pyrophosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of oxoglutarate dehydrogenase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
2-oxoglutarate dehydrogenase, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Leptonychotes weddellii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepWed1.0 Primary Assembly

Genomic

  1. NW_006383796.1 Reference LepWed1.0 Primary Assembly

    Range
    445283..515766
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031031334.1 → XP_030887194.1  2-oxoglutarate dehydrogenase, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A7F8R1M1
    Conserved Domains (1) summary
    PRK09404
    Location:49 → 1026
    sucA; 2-oxoglutarate dehydrogenase E1 component; Reviewed

  2. XM_006736424.2 → XP_006736487.1  2-oxoglutarate dehydrogenase, mitochondrial isoform X4

    UniProtKB/TrEMBL
    A0A2U3XYE4
    Conserved Domains (1) summary
    PRK09404
    Location:49 → 1011
    sucA; 2-oxoglutarate dehydrogenase E1 component; Reviewed

  3. XM_006736423.2 → XP_006736486.1  2-oxoglutarate dehydrogenase, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A2U3XYH8
    Conserved Domains (1) summary
    PRK09404
    Location:49 → 1030
    sucA; 2-oxoglutarate dehydrogenase E1 component; Reviewed

  4. XM_031031335.1 → XP_030887195.1  2-oxoglutarate dehydrogenase, mitochondrial isoform X3

    UniProtKB/TrEMBL
    A0A7F8R1E4
    Conserved Domains (1) summary
    PRK09404
    Location:49 → 1015
    sucA; 2-oxoglutarate dehydrogenase E1 component; Reviewed
Nucleotide Protein
Heading Accession and Version

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