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PKD1L2 polycystin-1-like protein 2 [ Leptonychotes weddellii (Weddell seal) ]

Gene ID: 102725657, updated on 10-Mar-2024

Summary

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Gene symbol
PKD1L2
Gene description
polycystin-1-like protein 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Leptonychotes weddellii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Leptonychotes
Orthologs
human all
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Genomic context

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See PKD1L2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
41
Annotation release Status Assembly Chr Location
101 current LepWed1.0 (GCF_000349705.1) Unplaced Scaffold NW_006385823.1 (183687..262936, complement)

NW_006385823.1Genomic Context describing neighboring genes Neighboring gene chromosome unknown C16orf46 homolog Neighboring gene glycine cleavage system protein H Neighboring gene beta-carotene oxygenase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006385823 Unplaced Scaffold Reference LepWed1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in detection of mechanical stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: polycystic kidney disease protein 1-like 2
Names
polycystin 1 like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Leptonychotes weddellii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepWed1.0 Primary Assembly

Genomic

  1. NW_006385823.1 Reference LepWed1.0 Primary Assembly

    Range
    183687..262936 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006748111.1 → XP_006748174.1  LOW QUALITY PROTEIN: polycystic kidney disease protein 1-like 2

    UniProtKB/TrEMBL
    A0A2U3YWR7
    Conserved Domains (5) summary
    cd01752
    Location:1182 → 1301
    PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
    pfam01825
    Location:1072 → 1111
    GPS; GPCR proteolysis site, GPS, motif
    pfam02010
    Location:378 → 693
    REJ; REJ domain
    pfam02140
    Location:9 → 45
    Gal_Lectin; Galactose binding lectin domain
    pfam08016
    Location:1778 → 2199
    PKD_channel; Polycystin cation channel
Nucleotide Protein
Heading Accession and Version

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