U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC01232 long intergenic non-protein coding RNA 1232 [ Homo sapiens (human) ]

Gene ID: 102725509, updated on 10-Oct-2023

Summary

Official Symbol
LINC01232provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1232provided by HGNC
Primary source
HGNC:HGNC:49755
See related
AllianceGenome:HGNC:49755
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TCONS_00021520
Expression
Broad expression in testis (RPKM 1.2), small intestine (RPKM 0.4) and 22 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LINC01232 in Genome Data Viewer
Location:
13q32.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (99486962..99499306, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (98697852..98710196, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (100139216..100151560, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene UBA domain containing 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7937 Neighboring gene Sharpr-MPRA regulatory region 8816 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:100037611-100038229 Neighboring gene high mobility group box 3 pseudogene 4 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7938 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:100069445-100070364 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7939 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7940 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7941 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7942 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7943 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7944 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr13:100084644-100085843 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7945 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7947 Neighboring gene C-C motif chemokine receptor 12, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:100105623-100106122 Neighboring gene Sharpr-MPRA regulatory region 5830 Neighboring gene MPRA-validated peak2103 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:100147579-100148093 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7948 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7949 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7950 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:100153518-100154106 Neighboring gene long intergenic non-protein coding RNA 449 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5471 Neighboring gene transmembrane 9 superfamily member 2 Neighboring gene RNY3 pseudogene 6

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110731.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139035

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    99486962..99499306 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    98697852..98710196 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)