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CDH18-AS1 CDH18 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 102725105, updated on 10-Oct-2023

Summary

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Official Symbol
CDH18-AS1provided by HGNC
Official Full Name
CDH18 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:53088
See related
Ensembl:ENSG00000249854 AllianceGenome:HGNC:53088
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.6) See more
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Genomic context

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Location:
5p14.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (20305551..20332446)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (20307389..20334285)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (20305660..20332555)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene cadherin 18 Neighboring gene uncharacterized LOC105374672 Neighboring gene MPRA-validated peak5177 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:19859069-19859650 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:19927819-19928466 Neighboring gene NANOG hESC enhancer GRCh37_chr5:20020216-20020741 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:20275974-20277173 Neighboring gene uncharacterized LOC124900948 Neighboring gene nucleoporin 50 pseudogene 3 Neighboring gene NANOG hESC enhancer GRCh37_chr5:20601861-20602362 Neighboring gene Sharpr-MPRA regulatory region 13238 Neighboring gene long intergenic non-protein coding RNA 2241 Neighboring gene long intergenic non-protein coding RNA 2146 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:20679066-20680265 Neighboring gene UBX domain protein 2A pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146519.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC094103
    Related
    ENST00000671155.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    20305551..20332446
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    20307389..20334285
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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