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POM121L15P POM121 transmembrane nucleoporin like 15, pseudogene [ Homo sapiens (human) ]

Gene ID: 102725072, updated on 17-Sep-2024

Summary

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Official Symbol
POM121L15Pprovided by HGNC
Official Full Name
POM121 transmembrane nucleoporin like 15, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:55894
See related
Ensembl:ENSG00000293159 AllianceGenome:HGNC:55894
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This transcribed pseudogene is a member of the POM121 family of pseudogenes which are primate-specific. One of the non-coding transcripts on this locus is similar to a linc RNA, linc-UR-B1, thought to have a function in spermatogenesis (described in Rubino, et al, 2021; PMID: 33633774). [provided by RefSeq, Jan 2024]
Expression
Restricted expression toward testis (RPKM 59.4) See more
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Genomic context

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See POM121L15P in Genome Data Viewer
Location:
22q11.21
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (18846286..18861064)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (19221344..19236119)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (18833799..18848577)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene gamma-glutamyltransferase 3 pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr22:18784852-18785463 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:18790287-18790788 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:18790789-18791288 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:18808119-18808632 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:18808633-18809148 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:18809149-18809662 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:18809663-18810176 Neighboring gene OCT4-H3K4me1 hESC enhancer GRCh37_chr22:18810177-18810690 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:18811010-18811514 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:18812019-18812522 Neighboring gene E2F transcription factor 6 pseudogene 1 Neighboring gene POM121 transmembrane nucleoporin pseudogene Neighboring gene BCR pseudogene 7 Neighboring gene family with sequence similarity 230 member F Neighboring gene OCT4 hESC enhancer GRCh37_chr22:18883553-18884054 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:18890927-18891786 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:18891787-18892644 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:18892762-18893300 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:18893301-18893838 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:18893839-18894376 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:18895933-18896636 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:18896637-18897339 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:18897340-18898042 Neighboring gene DiGeorge syndrome critical region gene 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Human Ubiquitin-Specific Peptidase 18 Is Regulated by microRNAs via the 3'Untranslated Region, A Sequence Duplicated in Long Intergenic Non-coding RNA Genes Residing in chr22q11.21. Rubino E, et al. Front Genet, 2020. PMID 33633774, Free PMC Article
  2. A proteome-scale map of the human interactome network. Rolland T, et al. Cell, 2014 Nov 20. PMID 25416956, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Other Names

  • POM121 transmembrane nucleoporin pseudogene

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135922.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This transcript has the same exon combination as long non-coding RNA, linc-UR-B1, described in PMID:33633774.
    Source sequence(s)
    AC008103, AC008132, AL045321, BC051721
    Related
    ENST00000412938.5

  2. NR_170942.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008103, AC008132

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    18846286..18861064
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    19221344..19236119
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5BKY6.1 GenPept UniProtKB/Swiss-Prot:Q5BKY6

Gene LinkOut

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Molecular Biology Databases
Research Materials