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LINC02128 long intergenic non-protein coding RNA 2128 [ Homo sapiens (human) ]

Gene ID: 102724940, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02128provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2128provided by HGNC
Primary source
HGNC:HGNC:52986
See related
Ensembl:ENSG00000261241 AllianceGenome:HGNC:52986
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC02187
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
16q12.1
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (50840056..50901061)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (56637742..56698774)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene CYLD lysine 63 deubiquitinase Neighboring gene CYLD antisense RNA 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:50843053-50844052 Neighboring gene long intergenic non-protein coding RNA 2168 Neighboring gene VISTA enhancer hs162 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:50912801-50913712 Neighboring gene RNA, 5S ribosomal pseudogene 426 Neighboring gene MPRA-validated peak2593 silencer Neighboring gene uncharacterized LOC124903775 Neighboring gene VISTA enhancer hs79 Neighboring gene uncharacterized LOC107984903 Neighboring gene long intergenic non-protein coding RNA 2127

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • long intergenic non-protein coding RNA 2187

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_184285.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007728, AC025810, AC027688
    Related
    ENST00000662292.1

  2. NR_184286.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007728, AC025810, AC027688
    Related
    ENST00000641266.1

  3. NR_184287.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007728, AC025810, AC027688
    Related
    ENST00000665312.1

  4. NR_184288.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007728, AC025810, AC027688
    Related
    ENST00000661857.1

  5. NR_184289.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC025810, AC027688
    Related
    ENST00000641755.1

  6. NR_184290.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC025810, AC027688

  7. NR_184291.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC025810, AC027688

  8. NR_184292.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC025810, AC027688

  9. NR_184293.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC025810, AC027688
    Related
    ENST00000666352.1

  10. NR_184294.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC025810, AC027688
    Related
    ENST00000669971.1

  11. NR_184295.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC025810, AC027688
    Related
    ENST00000654545.1

  12. NR_184296.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC025810, AC027688
    Related
    ENST00000661631.1

  13. NR_184297.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC025810, AC027688

  14. NR_184298.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC025810, AC027688
    Related
    ENST00000657894.1

  15. NR_184299.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC025810, AC027688
    Related
    ENST00000663343.1

  16. NR_184300.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC025810, AC027688
    Related
    ENST00000668895.1

  17. NR_184301.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC025810
    Related
    ENST00000576842.2

  18. NR_184302.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC025810
    Related
    ENST00000655464.1

  19. NR_184303.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC025810, AC027688
    Related
    ENST00000666836.1

  20. NR_184304.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC025810, AC027688
    Related
    ENST00000669828.1

  21. NR_184305.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC025810, AC027688
    Related
    ENST00000666019.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    50840056..50901061
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    56637742..56698774
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases