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LINC02412 long intergenic non-protein coding RNA 2412 [ Homo sapiens (human) ]

Gene ID: 102724933, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02412provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2412provided by HGNC
Primary source
HGNC:HGNC:53341
See related
AllianceGenome:HGNC:53341
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
12q22
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (93174366..93181832)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (93155204..93162668)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (93568142..93575608)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC643339 Neighboring gene uncharacterized LOC105369908 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6762 Neighboring gene ribosomal protein L41 pseudogene 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6763 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:93535709-93535869 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:93561467-93562016 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6764 Neighboring gene MPRA-validated peak1892 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6765 Neighboring gene MPRA-validated peak1893 silencer Neighboring gene small nucleolar RNA U13 Neighboring gene small nucleolar RNA SNORD74

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120492.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA602992, AC138123, AI821790, CB049231, CB049232

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    93174366..93181832
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    93155204..93162668
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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