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LOC102724765 uncharacterized LOC102724765 [ Homo sapiens (human) ]

Gene ID: 102724765, updated on 17-Sep-2024

Summary

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Gene symbol
LOC102724765
Gene description
uncharacterized LOC102724765
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in bone marrow (RPKM 1.6), spleen (RPKM 1.1) and 11 other tissues See more
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Genomic context

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See LOC102724765 in Genome Data Viewer
Location:
6p22.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (25014952..25036141, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (24880148..24901322, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (25015180..25036369, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene RHO family interacting cell polarization regulator 2 Neighboring gene uncharacterized LOC105374981 Neighboring gene MT-CO2 pseudogene 33 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:24980966-24981536 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:24985321-24985939 Neighboring gene peptidylprolyl isomerase A pseudogene 29 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:25009294-25009446 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24162 Neighboring gene RNA, 7SL, cytoplasmic 334, pseudogene Neighboring gene argininosuccinate synthetase 1 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24163 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24164 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24165 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:25059321-25059634 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:25061721-25062289 Neighboring gene cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene Neighboring gene uncharacterized LOC124901282 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24166 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24167 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24168 Neighboring gene nucleoporin 50 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187802.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL133268, AL160400

  2. NR_187803.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL133268, AL160400

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    25014952..25036141 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    24880148..24901322 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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