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LOC102724749 uncharacterized LOC102724749 [ Homo sapiens (human) ]

Gene ID: 102724749, updated on 17-Sep-2024

Summary

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Gene symbol
LOC102724749
Gene description
uncharacterized LOC102724749
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC102724749 in Genome Data Viewer
Location:
6p22.3
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (23337691..23404141)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (23210563..23277023)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (23337919..23404369)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374974 Neighboring gene RNA, U6 small nuclear 1060, pseudogene Neighboring gene ribosomal protein L6 pseudogene 18 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:23175123-23176322 Neighboring gene VISTA enhancer hs1352 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:23218776-23219447 Neighboring gene uncharacterized LOC105374976 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24149 Neighboring gene uncharacterized LOC105374975 Neighboring gene uncharacterized LOC124901276

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187789.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139231, AL157370

  2. NR_187790.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139231, AL157370

  3. NR_187791.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139231

  4. NR_187792.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139231

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    23337691..23404141
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    23210563..23277023
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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