U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC02940 long intergenic non-protein coding RNA 2940 [ Homo sapiens (human) ]

Gene ID: 102724740, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
LINC02940provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2940provided by HGNC
Primary source
HGNC:HGNC:55955
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CCMAlnc
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
21q22.2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (38985351..39019256, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (37370011..37409393, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene ETS2 antisense RNA 1 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr21:40275087-40276286 Neighboring gene CAGE-defined mid-level expression enhancer in LOC400867 intron Neighboring gene ribosomal protein SA pseudogene 64 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:40286344-40286844 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:40286845-40287345 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:40316387-40317085 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:40318461-40318589 Neighboring gene long intergenic non-protein coding RNA 1700 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18464 Neighboring gene VISTA enhancer hs1516 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18465 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:40393817-40394317 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:40395325-40395890 Neighboring gene long intergenic non-protein coding RNA 2943 Neighboring gene Sharpr-MPRA regulatory region 7751 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:40434218-40434800 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:40447061-40447847 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13318 Neighboring gene ribosomal protein L23a pseudogene 12

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. CCMAlnc Promotes the Malignance of Colorectal Cancer by Modulating the Interaction Between miR-5001-5p and Its Target mRNA. Yan Y, et al. Front Cell Dev Biol, 2020. PMID 33681178, Free PMC Article
  2. Novel genes identified in a high-density genome wide association study for nicotine dependence. Bierut LJ, et al. Hum Mol Genet, 2007 Jan 1. PMID 17158188, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Novel genes identified in a high-density genome wide association study for nicotine dependence.
EBI GWAS Catalog

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

General gene information

Go to the top of the page Help

Other Names

  • colorectal cancer metastasis-associated lncRNA

Clone Names

  • AF064858.8, AF064858.11

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    38985351..39019256 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007067867.1 RNA Sequence

  2. XR_007067868.1 RNA Sequence

  3. XR_007067869.1 RNA Sequence

  4. XR_007067866.1 RNA Sequence

  5. XR_007067865.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    37370011..37409393 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007090178.1 RNA Sequence

  2. XR_007090177.1 RNA Sequence

  3. XR_007090179.1 RNA Sequence

  4. XR_007090176.1 RNA Sequence

  5. XR_007090174.1 RNA Sequence

  6. XR_007090175.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases