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MYO1D-DT MYO1D divergent transcript [ Homo sapiens (human) ]

Gene ID: 102724715, updated on 17-Jun-2024

Summary

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Official Symbol
MYO1D-DTprovided by HGNC
Official Full Name
MYO1D divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55837
See related
Ensembl:ENSG00000236377 AllianceGenome:HGNC:55837
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
lncCRLA
Expression
Low expression observed in reference dataset See more
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Genomic context

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See MYO1D-DT in Genome Data Viewer
Location:
17q11.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (32876855..32906586)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (33822934..33852656)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371734 Neighboring gene uncharacterized LOC107985012 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8427 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:30849483-30850006 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:30850007-30850529 Neighboring gene myosin ID Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr17:30873137-30873636 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12035 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12036 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:31010379-31011000 Neighboring gene MPRA-validated peak2803 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8428 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8429 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12038 Neighboring gene uncharacterized LOC124903981 Neighboring gene Sharpr-MPRA regulatory region 12414 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12039 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:31203674-31203861 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:31213662-31214258 Neighboring gene CRISPRi-validated MYO1D non-hub enhancer 1 Neighboring gene CRISPRi-validated cis-regulatory element chr17.1747 Neighboring gene Sharpr-MPRA regulatory region 12135 Neighboring gene CRISPRi-validated MYO1D hub enhancer Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr17:31244864-31245495 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:31262798-31263448 Neighboring gene Sharpr-MPRA regulatory region 812 Neighboring gene H2B.N variant histone 1 Neighboring gene transmembrane protein 98 Neighboring gene sperm acrosome associated 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. lncCRLA Enhanced Chemoresistance in Lung Adenocarcinoma That Underwent EpithelialMesenchymal Transition. Min W, et al. Oncol Res, 2022 Jan 31. PMID 33985619, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • lncRNA-related chemotherapy resistance in lung adenocarcinoma

Clone Names

  • AC084809.2, AC084809.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_184086.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC084809
    Related
    ENST00000704359.1

  2. NR_184087.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC084809
    Related
    ENST00000704362.1

  3. NR_184088.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC084809

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    32876855..32906586
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    33822934..33852656
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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