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LOC102724700 uncharacterized LOC102724700 [ Homo sapiens (human) ]

Gene ID: 102724700, updated on 17-Jun-2024

Summary

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Gene symbol
LOC102724700
Gene description
uncharacterized LOC102724700
See related
Ensembl:ENSG00000249818
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 3.6) See more
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Genomic context

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See LOC102724700 in Genome Data Viewer
Location:
4q31.3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (151886946..151910170, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (155210036..155233277, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986197 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:152593699-152594498 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr4:152608614-152609114 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr4:152609115-152609615 Neighboring gene glutamyl-tRNA amidotransferase subunit B Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22022 Neighboring gene uncharacterized LOC105377488 Neighboring gene LOC105377488-LOC127898556 Neighboring gene NANOG hESC enhancer GRCh37_chr4:152732461-152732962 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr4:152795151-152795762 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22023 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22024 Neighboring gene uncharacterized LOC127898556 Neighboring gene long intergenic non-protein coding RNA 3074

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188363.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC097375, AC112242
    Related
    ENST00000667963.1

  2. NR_188364.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC097375, AC112242

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    151886946..151910170 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    155210036..155233277 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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