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LINC01905 long intergenic non-protein coding RNA 1905 [ Homo sapiens (human) ]

Gene ID: 102724698, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01905provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1905provided by HGNC
Primary source
HGNC:HGNC:52724
See related
Ensembl:ENSG00000267057 AllianceGenome:HGNC:52724
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01905 in Genome Data Viewer
Location:
18q21.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (56042278..56096315)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (56245051..56299077)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (53709509..53763546)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:53559811-53560408 Neighboring gene long intergenic non-protein coding RNA 1416 Neighboring gene long intergenic non-protein coding RNA 3092 Neighboring gene long intergenic non-protein coding RNA 3069 Neighboring gene small nucleolar RNA SNORA73 family Neighboring gene long intergenic non-protein coding RNA 1539 Neighboring gene uncharacterized LOC105372132 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13361 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9475 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13362 Neighboring gene NANOG hESC enhancer GRCh37_chr18:54019108-54019609 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr18:54080945-54081494 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr18:54087957-54088683 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:54230563-54231064 Neighboring gene uncharacterized LOC105372135

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146510.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC006305, AC009271

  2. NR_146511.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate exon compared to variant 1.
    Source sequence(s)
    AC006305, AC009271
    Related
    ENST00000592045.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    56042278..56096315
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    56245051..56299077
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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