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LINC02556 long intergenic non-protein coding RNA 2556 [ Homo sapiens (human) ]

Gene ID: 102724679, updated on 10-Oct-2023

Summary

Official Symbol
LINC02556provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2556provided by HGNC
Primary source
HGNC:HGNC:53595
See related
Ensembl:ENSG00000236611 AllianceGenome:HGNC:53595
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC02556 in Genome Data Viewer
Location:
22q11.23
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (23326616..23328493)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (23749477..23751350)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (23668803..23670680)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene BCR activator of RhoGEF and GTPase Neighboring gene BCR-ABL micro-breakpoint cluster region Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23656171-23656672 Neighboring gene Sharpr-MPRA regulatory region 15419 Neighboring gene POM121 transmembrane nucleoporin like 11, pseudogene Neighboring gene ribosomal protein S10 pseudogene 30 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr22:23709276-23710010 Neighboring gene carboxylesterase 5A pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23728238-23729220 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23730785-23731642 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23735088-23735588 Neighboring gene coiled-coil domain containing 188B, pseudogene Neighboring gene ZDHHC8B, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_149133.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000343
    Related
    ENST00000450776.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    23326616..23328493
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    23749477..23751350
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)