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MSANTD5 Myb/SANT DNA binding domain containing 5 [ Homo sapiens (human) ]

Gene ID: 102724657, updated on 10-Mar-2024

Summary

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Official Symbol
MSANTD5provided by HGNC
Official Full Name
Myb/SANT DNA binding domain containing 5provided by HGNC
Primary source
HGNC:HGNC:55184
See related
Ensembl:ENSG00000285891 AllianceGenome:HGNC:55184
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

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See MSANTD5 in Genome Data Viewer
Location:
5q35.3
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (178691534..178707472, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (179243565..179259503, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (178121573..178124762, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:178052997-178053677 Neighboring gene CDC like kinase 4 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:178057087-178058286 Neighboring gene RN7SK pseudogene 70 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:178070356-178071555 Neighboring gene vomeronasal 2 receptor 2 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:178150344-178150844 Neighboring gene MPRA-validated peak5604 silencer Neighboring gene zinc finger protein 354A Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16722 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16723 Neighboring gene acetoacetyl-CoA synthetase pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Homology

General protein information

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Preferred Names
putative uncharacterized protein MSANTD5
Names
Myb/SANT DNA binding domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001395436.2 → NP_001382365.1  putative uncharacterized protein MSANTD5

    Status: VALIDATED

    Source sequence(s)
    AC113348
    Consensus CDS
    CCDS93835.1
    UniProtKB/Swiss-Prot
    A0A3B3IT52
    Related
    ENSP00000497547.1, ENST00000648368.2
    Conserved Domains (1) summary
    pfam13837
    Location:37 → 86
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    178691534..178707472 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017010138.1 → XP_016865627.1  putative uncharacterized protein MSANTD5 isoform X1

    UniProtKB/Swiss-Prot
    A0A3B3IT52
    Conserved Domains (1) summary
    pfam13837
    Location:37 → 86
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

RNA

  1. XR_007058568.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    179243565..179259503 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054351413.1 → XP_054207388.1  putative uncharacterized protein MSANTD5 isoform X1

    UniProtKB/Swiss-Prot
    A0A3B3IT52

RNA

  1. XR_008487069.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A3B3IT52.1 GenPept UniProtKB/Swiss-Prot:A0A3B3IT52

Gene LinkOut

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