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LOC102724511 uncharacterized LOC102724511 [ Homo sapiens (human) ]

Gene ID: 102724511, updated on 10-Oct-2023

Summary

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Gene symbol
LOC102724511
Gene description
uncharacterized LOC102724511
See related
Ensembl:ENSG00000232197
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.7) See more
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Genomic context

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See LOC102724511 in Genome Data Viewer
Location:
6q27
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (170160642..170163027)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (171522442..171524829)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (170475866..170478251)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene proline-rich receptor-like protein kinase PERK10 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170462430-170463234 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17801 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:170467761-170468664 Neighboring gene uncharacterized LOC105378153 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170475855-170476719 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170479250-170480187 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:170496100-170496307 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:170500920-170501494 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170504194-170504694 Neighboring gene ribosomal protein L12 pseudogene 23 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170521815-170522322 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170522323-170522829 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170523369-170523870 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170523871-170524370 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170532303-170533284 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170535247-170536227 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:170541906-170542750 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170543843-170544393 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170544394-170544943 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170553487-170554252 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170554253-170555018 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170560847-170561347 Neighboring gene uncharacterized LOC154449

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125878.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX092407, HY033083
    Related
    ENST00000429305.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    170160642..170163027
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    171522442..171524829
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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