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LOC102724427 uncharacterized LOC102724427 [ Homo sapiens (human) ]

Gene ID: 102724427, updated on 17-Sep-2024

Summary

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Gene symbol
LOC102724427
Gene description
uncharacterized LOC102724427
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward thyroid (RPKM 2.3) See more
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Genomic context

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See LOC102724427 in Genome Data Viewer
Location:
19p12
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (20247563..20257291)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (20384812..20394792)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372310 Neighboring gene zinc finger protein 486 Neighboring gene zinc finger protein 107 pseudogene Neighboring gene BCL2 interacting protein 3 pseudogene 17 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:20348494-20349004 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:20349516-20350034 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:20358871-20359676 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr19:20372128-20372753 Neighboring gene ACTR2 pseudogene 2 Neighboring gene BCL2 interacting protein 3 pseudogene 18

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    20247563..20257291
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_936402.3 RNA Sequence

  2. XR_936403.3 RNA Sequence

  3. XR_936396.3 RNA Sequence

  4. XR_936400.3 RNA Sequence

  5. XR_936398.3 RNA Sequence

  6. XR_430184.4 RNA Sequence

  7. XR_936405.3 RNA Sequence

  8. XR_936401.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    20384812..20394792
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007088943.1 RNA Sequence

  2. XR_007088945.1 RNA Sequence

  3. XR_007088944.1 RNA Sequence

  4. XR_007088942.1 RNA Sequence

  5. XR_007088947.1 RNA Sequence

  6. XR_007088946.1 RNA Sequence

  7. XR_007088948.1 RNA Sequence

  8. XR_007088949.1 RNA Sequence

Nucleotide Protein
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