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LOC102724419 uncharacterized LOC102724419 [ Homo sapiens (human) ]

Gene ID: 102724419, updated on 17-Sep-2024

Summary

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Gene symbol
LOC102724419
Gene description
uncharacterized LOC102724419
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC102724419 in Genome Data Viewer
Location:
3q26.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (164028194..164197552, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (166811994..166980279, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_66489 Neighboring gene RNA, U7 small nuclear 82 pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:163470926-163471426 Neighboring gene NANOG hESC enhancer GRCh37_chr3:163497107-163497624 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:163625147-163625703 Neighboring gene NGRN pseudogene 1 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:163897108-163898307 Neighboring gene microRNA 1263 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:164038591-164039092 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:164049948-164050849 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:164050850-164051750 Neighboring gene uncharacterized LOC105374189 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:164059961-164060513 Neighboring gene uncharacterized LOC105374190

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    164028194..164197552 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001740997.2 RNA Sequence

  2. XR_007096283.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    166811994..166980279 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007073240.1 RNA Sequence

  2. XR_007073241.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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