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LOC102724389 uncharacterized LOC102724389 [ Homo sapiens (human) ]

Gene ID: 102724389, updated on 17-Jun-2024

Summary

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Gene symbol
LOC102724389
Gene description
uncharacterized LOC102724389
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC102724389 in Genome Data Viewer
Location:
2p14
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (68332624..68347676)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (68343194..68358246)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene VISTA enhancer hs2040 Neighboring gene protein phosphatase 3 regulatory subunit B, alpha Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:68432700-68433200 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_59162 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_59182 Neighboring gene uncharacterized LOC107985892 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11586 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11587 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11588 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:68480114-68480783 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11589 Neighboring gene Sharpr-MPRA regulatory region 10638 Neighboring gene cannabinoid receptor interacting protein 1 Neighboring gene CRISPRi-validated cis-regulatory element chr2.2452 Neighboring gene uncharacterized LOC101927723 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15948 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15949 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15950 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15951 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15952 Neighboring gene pleckstrin Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11590 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11591 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15953 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15954 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15955 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15956 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11592 Neighboring gene WDR4 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    68332624..68347676
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_940224.4 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    68343194..68358246
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007072174.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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