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LINC02585 long intergenic non-protein coding RNA 2585 [ Homo sapiens (human) ]

Gene ID: 102724368, updated on 26-Oct-2024

Summary

Official Symbol
LINC02585provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2585provided by HGNC
Primary source
HGNC:HGNC:50302
See related
AllianceGenome:HGNC:50302
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CELSR3-AS1
Expression
Biased expression in testis (RPKM 1.6), fat (RPKM 0.1) and 7 other tissues See more
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Genomic context

See LINC02585 in Genome Data Viewer
Location:
3p21.31
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (48663768..48669174)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (48692728..48698135)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (48701201..48706607)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene solute carrier family 26 member 6 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14335 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14336 Neighboring gene microRNA 6824 Neighboring gene cadherin EGF LAG seven-pass G-type receptor 3 Neighboring gene microRNA 4793 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:48693647-48694344 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:48694345-48695040 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:48698042-48698628 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:48698629-48699213 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:48700385-48700970 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19841 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19842 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:48702141-48702725 Neighboring gene NCK interacting protein with SH3 domain Neighboring gene Sharpr-MPRA regulatory region 90 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:48725238-48725738 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:48725739-48726239 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:48732697-48733286 Neighboring gene inositol hexakisphosphate kinase 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:48750133-48750632

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_111921.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC121252, BM714397

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    48663768..48669174
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    48692728..48698135
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)