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SIPA1L1-AS1 SIPA1L1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 102724015, updated on 10-Oct-2023

Summary

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Official Symbol
SIPA1L1-AS1provided by HGNC
Official Full Name
SIPA1L1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:55432
See related
AllianceGenome:HGNC:55432
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See SIPA1L1-AS1 in Genome Data Viewer
Location:
14q24.2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (71292724..71321848, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (65498166..65527294, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene pecanex 1 Neighboring gene Sharpr-MPRA regulatory region 3093 Neighboring gene PTTG1 pseudogene 1 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr14:71654848-71656047 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8670 Neighboring gene uncharacterized LOC105370706 Neighboring gene Sharpr-MPRA regulatory region 2320 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8671 Neighboring gene uncharacterized LOC107984654 Neighboring gene Sharpr-MPRA regulatory region 5380 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5896 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8672 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5897 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8673 Neighboring gene PDZ domain containing 11 pseudogene Neighboring gene signal induced proliferation associated 1 like 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8674 Neighboring gene small nucleolar RNA, C/D box 56B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_184173.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005476

  2. NR_184174.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005476

  3. NR_184175.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005476

  4. NR_184176.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005476

  5. NR_184177.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005476

  6. NR_184178.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005476

  7. NR_184179.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005476

  8. NR_184180.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005476

  9. NR_184181.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005476

  10. NR_184182.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005476

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    71292724..71321848 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    65498166..65527294 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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