U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC01418 long intergenic non-protein coding RNA 1418 [ Homo sapiens (human) ]

Gene ID: 102724001, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
LINC01418provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1418provided by HGNC
Primary source
HGNC:HGNC:50711
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
15q25.2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (81859747..81967194, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (79723213..79831229, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370921 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:81966619-81967178 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:81989805-81990445 Neighboring gene uncharacterized LOC124903541 Neighboring gene NANOG hESC enhancer GRCh37_chr15:82031361-82031872 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:82042098-82042672 Neighboring gene NANOG hESC enhancer GRCh37_chr15:82050490-82051006 Neighboring gene NANOG hESC enhancer GRCh37_chr15:82051007-82051522 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9957 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9958 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:82162852-82163453 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:82163454-82164054 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9959 Neighboring gene CRISPRi-validated cis-regulatory element chr15.2841 Neighboring gene MPRA-validated peak2399 silencer Neighboring gene uncharacterized LOC105370922 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:82287863-82288521 Neighboring gene protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) pseudogene Neighboring gene uncharacterized LOC105370923

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Antisense oligonucleotides targeting lncRNA AC104041.1 induces antitumor activity through Wnt2B/β-catenin pathway in head and neck squamous cell carcinomas. Li M, et al. Cell Death Dis, 2020 Aug 13. PMID 32826863, Free PMC Article
  2. A genome-wide association study of clinical symptoms of dissociation in a trauma-exposed sample. Wolf EJ, et al. Depress Anxiety, 2014 Apr. PMID 24677629, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
A genome-wide association study of clinical symptoms of dissociation in a trauma-exposed sample.
EBI GWAS Catalog

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

General gene information

Go to the top of the page Help

Clone Names

  • AC104041.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    81859747..81967194 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001751640.2 RNA Sequence

  2. XR_001751639.2 RNA Sequence

  3. XR_932527.3 RNA Sequence

  4. XR_001751642.2 RNA Sequence

  5. XR_001751641.2 RNA Sequence

  6. XR_932528.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    79723213..79831229 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007085765.1 RNA Sequence

  2. XR_007085766.1 RNA Sequence

  3. XR_007085764.1 RNA Sequence

  4. XR_007085769.1 RNA Sequence

  5. XR_007085768.1 RNA Sequence

  6. XR_007085767.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases