U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC01819 long intergenic non-protein coding RNA 1819 [ Homo sapiens (human) ]

Gene ID: 102723854, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
LINC01819provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1819provided by HGNC
Primary source
HGNC:HGNC:52624
See related
Ensembl:ENSG00000231826 AllianceGenome:HGNC:52624
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
KPRT4; LINC02590
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
2p21
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (43027853..43039556, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (43033104..43044809, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (43254992..43266682, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374568 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:43153519-43154204 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:43154205-43154890 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:43159155-43159942 Neighboring gene uncharacterized LOC112268413 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:43172691-43173490 Neighboring gene CRISPRi-validated cis-regulatory element chr2.1678 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:43216953-43217505 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15656 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:43227725-43228506 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:43253326-43254142 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:43254143-43254958 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:43268142-43269084 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:43269085-43270026 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:43270027-43270968 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:43273691-43274404 Neighboring gene uncharacterized LOC107985876 Neighboring gene uncharacterized LOC124907756 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:43307601-43308303 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:43310546-43311312 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:43311313-43312079 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:43313629-43314168 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:43314169-43314707 Neighboring gene RNA, U6 small nuclear 242, pseudogene

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A feedforward circuit between KLF5 and lncRNA KPRT4 contributes to basal-like breast cancer. Du G, et al. Cancer Lett, 2022 May 28. PMID 35259457
  2. Identification of differential expression lncRNAs in gastric cancer using transcriptome sequencing and bioinformatics analyses. Wang Y, et al. Mol Med Rep, 2018 Jun. PMID 29693709, Free PMC Article
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

Go to the top of the page Help

Other Names

  • KLF5 positively regulated transcript 4
  • long intergenic non-protein coding RNA 2590

Clone Names

  • AC016735.2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110585.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC016735, AL541396
    Related
    ENST00000422351.5

  2. NR_175898.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC016735
    Related
    ENST00000686278.1

  3. NR_175899.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC016735
    Related
    ENST00000665782.1

  4. NR_175900.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC016735
    Related
    ENST00000693026.1

  5. NR_175901.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC016735
    Related
    ENST00000661354.1

  6. NR_175902.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC016735
    Related
    ENST00000662442.1

  7. NR_175903.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC016735
    Related
    ENST00000656487.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    43027853..43039556 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    43033104..43044809 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases