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LOC102723831 uncharacterized LOC102723831 [ Homo sapiens (human) ]

Gene ID: 102723831, updated on 10-Oct-2023

Summary

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Gene symbol
LOC102723831
Gene description
uncharacterized LOC102723831
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
6q25.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (151196673..151228457, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (152397289..152429072, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (151517808..151549592, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like Neighboring gene uncharacterized LOC124901432 Neighboring gene Sharpr-MPRA regulatory region 10334 Neighboring gene ribosomal protein L32 pseudogene 16 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:151450407-151451398 Neighboring gene microRNA 12131 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:151485034-151485534 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:151485535-151486035 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:151529211-151529710 Neighboring gene RNA, U6 small nuclear 300, pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr6:151550445-151550650 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:151560905-151561414 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:151561492-151562069 Neighboring gene ribosomal protein S12 pseudogene 11 Neighboring gene A-kinase anchoring protein 12 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25279 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25280 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:151612052-151612552 Neighboring gene RNA, U6 small nuclear 1247, pseudogene Neighboring gene RNY4 pseudogene 20

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125868.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC031960

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    151196673..151228457 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    152397289..152429072 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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