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LINC03015 long intergenic non-protein coding RNA 3015 [ Homo sapiens (human) ]

Gene ID: 102723672, updated on 10-Oct-2023

Summary

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Official Symbol
LINC03015provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 3015provided by HGNC
Primary source
HGNC:HGNC:56143
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC03015 in Genome Data Viewer
Location:
7p22.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (144444..149438, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (245102..250096, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (144444..149438, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375113 Neighboring gene uncharacterized LOC101929756 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:81530-82302 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:82303-83073 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:84367-85090 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:85091-85814 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:86539-87262 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:89543-90191 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:96283-97052 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:97053-97823 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:108674-109390 Neighboring gene uncharacterized LOC105375114 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:119835-120053 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:133814-134316 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:134317-134819 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:139089-139857 Neighboring gene Sharpr-MPRA regulatory region 13780 Neighboring gene long intergenic non-protein coding RNA 3014 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:159391-160174 Neighboring gene TRIO and F-actin-binding protein-like Neighboring gene uncharacterized LOC105375115

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Clone Names

  • AC093627.9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134325.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093627, AI459061, HY028924

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    144444..149438 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_021159998.1 Reference GRCh38.p14 PATCHES

    Range
    120132..125126 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187558.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    100243..105238 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_187653.1 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    136765..141759 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    245102..250096 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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