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BMP7-AS1 BMP7 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 102723590, updated on 10-Oct-2023

Summary

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Official Symbol
BMP7-AS1provided by HGNC
Official Full Name
BMP7 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40096
See related
AllianceGenome:HGNC:40096
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.9) See more
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Genomic context

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See BMP7-AS1 in Genome Data Viewer
Location:
20q13.31
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (57213696..57215866)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (58991429..58993599)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (55788752..55790922)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372685 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55707263-55707764 Neighboring gene VISTA enhancer hs2565 Neighboring gene uncharacterized LOC105372686 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55736368-55736868 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55747859-55748360 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55758285-55758807 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55758808-55759329 Neighboring gene bone morphogenetic protein 7 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:55773380-55774038 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:55774039-55774698 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr20:55780300-55781499 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55798567-55799068 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55801141-55801641 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:55806824-55807357 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:55807358-55807890 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55819232-55820156 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55834429-55834991 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55837926-55838642 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55839361-55840076 Neighboring gene BMP7 promoter region Neighboring gene translation initiation factor IF-2-like Neighboring gene uncharacterized LOC105372687 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55861989-55862490 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55862491-55862990 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55865617-55866584 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55867403-55867902 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55876343-55876878 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:55892097-55892598 Neighboring gene microRNA 4325

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110631.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL122058, BX104623, HY007704, HY191606

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    57213696..57215866
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    58991429..58993599
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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