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LOC102723536 uncharacterized LOC102723536 [ Homo sapiens (human) ]

Gene ID: 102723536, updated on 17-Sep-2024

Summary

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Gene symbol
LOC102723536
Gene description
uncharacterized LOC102723536
See related
Ensembl:ENSG00000231876
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.0) See more
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Genomic context

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See LOC102723536 in Genome Data Viewer
Location:
16p12.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (26318133..26340745)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (26594494..26617101)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (26329454..26352066)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371149 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:26290511-26291012 Neighboring gene uncharacterized LOC105371150 Neighboring gene long intergenic non-protein coding RNA 2195 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr16:26761011-26761512 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr16:26761513-26762012 Neighboring gene Sharpr-MPRA regulatory region 9783 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:26996855-26997503 Neighboring gene uncharacterized LOC105371153

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Clone Names

  • AC009158.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188594.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009158
    Related
    ENST00000653658.1

  2. NR_188595.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009158
    Related
    ENST00000669218.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    26318133..26340745
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    26594494..26617101
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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