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LOC102705000 hydroxyproline O-galactosyltransferase GALT2-like [ Oryza brachyantha (malo sina) ]

Gene ID: 102705000, updated on 7-Dec-2023

Summary

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Gene symbol
LOC102705000
Gene description
hydroxyproline O-galactosyltransferase GALT2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza brachyantha
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Genomic context

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See LOC102705000 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
7
Annotation release Status Assembly Chr Location
102 current ObraRS2 (GCF_000231095.2) 8 NC_023170.2 (1290570..1295224)
101 previous assembly Oryza_brachyantha.v1.4b (GCF_000231095.1) 8 NC_023170.1 (1344798..1349032)

Chromosome 8 - NC_023170.2Genomic Context describing neighboring genes Neighboring gene 60S acidic ribosomal protein P0 Neighboring gene BTB/POZ domain-containing protein At1g30440-like Neighboring gene pentatricopeptide repeat-containing protein At1g53600, mitochondrial-like Neighboring gene cytochrome P450 703A2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase GALT2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza brachyantha Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ObraRS2 Primary Assembly

Genomic

  1. NC_023170.2 Reference ObraRS2 Primary Assembly

    Range
    1290570..1295224
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015840228.2 → XP_015695714.2  hydroxyproline O-galactosyltransferase GALT2-like

    UniProtKB/TrEMBL
    J3MQ39
    Conserved Domains (1) summary
    PLN03133
    Location:114 → 638
    PLN03133; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein
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