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LOC102700221 sulfoquinovosyl transferase SQD2-like [ Oryza brachyantha (malo sina) ]

Gene ID: 102700221, updated on 7-Dec-2023

Summary

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Gene symbol
LOC102700221
Gene description
sulfoquinovosyl transferase SQD2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza brachyantha
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Genomic context

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See LOC102700221 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
102 current ObraRS2 (GCF_000231095.2) 3 NC_023165.2 (7442670..7447423)
101 previous assembly Oryza_brachyantha.v1.4b (GCF_000231095.1) 3 NC_023165.1 (7650948..7655593)

Chromosome 3 - NC_023165.2Genomic Context describing neighboring genes Neighboring gene protein ENDOPLASMIC RETICULUM-ARRESTED PEN3 Neighboring gene chromosome transmission fidelity protein 18 homolog Neighboring gene josephin-like protein Neighboring gene peroxisomal nicotinamide adenine dinucleotide carrier

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sulfolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sulfoquinovosyl transferase SQD2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza brachyantha Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ObraRS2 Primary Assembly

Genomic

  1. NC_023165.2 Reference ObraRS2 Primary Assembly

    Range
    7442670..7447423
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006649736.3 → XP_006649799.2  sulfoquinovosyl transferase SQD2-like

    UniProtKB/TrEMBL
    J3LMA3
    Conserved Domains (1) summary
    PLN02871
    Location:6 → 417
    PLN02871; UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Nucleotide Protein
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