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hcfc1b host cell factor C1b [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102698730, updated on 10-Mar-2024

Summary

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Gene symbol
hcfc1b
Gene description
host cell factor C1b
See related
Ensembl:ENSLOCG00000014733
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Also known as
hcfc1
Orthologs
zebrafish all
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Genomic context

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See hcfc1b in Genome Data Viewer
Location:
chromosome: LG1
Exon count:
30
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG1 NC_023179.1 (2723481..2755830)

Linkage Group LG1 - NC_023179.1Genomic Context describing neighboring genes Neighboring gene interleukin-1 receptor-associated kinase 1 Neighboring gene transmembrane protein 187 Neighboring gene uncharacterized LOC102698928 Neighboring gene cyclin-dependent kinase 20

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023179.1 Chromosome LG1 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1
Names
host cell factor C1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023179.1 Reference LepOcu1 Primary Assembly

    Range
    2723481..2755830
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015352778.1 → XP_015208264.1  host cell factor 1

    UniProtKB/TrEMBL
    W5NBZ7
    Related
    ENSLOCP00000018156.1, ENSLOCT00000018188.1
    Conserved Domains (3) summary
    cd00063
    Location:1591 → 1620
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:206 → 259
    Kelch; KELCH repeat [structural motif]
    pfam13415
    Location:221 → 269
    Kelch_3; Galactose oxidase, central domain
Nucleotide Protein
Heading Accession and Version

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