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LOC102698027 polypeptide N-acetylgalactosaminyltransferase 5 [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102698027, updated on 23-Oct-2024

Summary

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Gene symbol
LOC102698027
Gene description
polypeptide N-acetylgalactosaminyltransferase 5
See related
Ensembl:ENSLOCG00000005773
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Also known as
galnt5
Orthologs
human zebrafish all
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Genomic context

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See LOC102698027 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_09 current fLepOcu1.hap2 (GCF_040954835.1) 12 NC_090707.1 (12510381..12518103)
101 previous assembly LepOcu1 (GCF_000242695.1) Linkage Group LG12 NC_023190.1 (12155764..12165866)

Chromosome 12 - NC_090707.1Genomic Context describing neighboring genes Neighboring gene transfer RNA alanine (anticodon CGC) Neighboring gene glycerol-3-phosphate dehydrogenase 2 (mitochondrial) Neighboring gene ermin Neighboring gene cytohesin-interacting protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polypeptide N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040954835.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLepOcu1.hap2

Genomic

  1. NC_090707.1 Reference fLepOcu1.hap2

    Range
    12510381..12518103
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006636464.3 → XP_006636527.2  polypeptide N-acetylgalactosaminyltransferase 5

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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