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LOC102695568 heparan sulfate glucosamine 3-O-sulfotransferase 5 [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102695568, updated on 21-Oct-2024

Summary

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Gene symbol
LOC102695568
Gene description
heparan sulfate glucosamine 3-O-sulfotransferase 5
See related
Ensembl:ENSLOCG00000016976
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Also known as
hs3st5
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Genomic context

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See LOC102695568 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_09 current fLepOcu1.hap2 (GCF_040954835.1) 2 NC_090697.1 (5956372..6044040, complement)
101 previous assembly LepOcu1 (GCF_000242695.1) Linkage Group LG1 NC_023179.1 (55083415..55169694)

Chromosome 2 - NC_090697.1Genomic Context describing neighboring genes Neighboring gene histone deacetylase 2 Neighboring gene myristoylated alanine-rich protein kinase C substrate a Neighboring gene fyn-related Src family tyrosine kinase Neighboring gene 5'-nucleotidase domain containing 1 Neighboring gene collagen, type X, alpha 1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 5
Names
heparan sulfate-glucosamine 3-sulfotransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040954835.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLepOcu1.hap2

Genomic

  1. NC_090697.1 Reference fLepOcu1.hap2

    Range
    5956372..6044040 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006626164.3 → XP_006626227.1  heparan sulfate glucosamine 3-O-sulfotransferase 5

    UniProtKB/TrEMBL
    W5NK24
    Related
    ENSLOCP00000020983.1
    Conserved Domains (1) summary
    pfam00685
    Location:89 → 329
    Sulfotransfer_1; Sulfotransferase domain

  2. XM_069196255.1 → XP_069052356.1  heparan sulfate glucosamine 3-O-sulfotransferase 5

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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