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LOC102692109 carbohydrate sulfotransferase 8 [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102692109, updated on 3-Dec-2024

Summary

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Gene symbol
LOC102692109
Gene description
carbohydrate sulfotransferase 8
See related
Ensembl:ENSLOCG00000001953
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Also known as
chst8
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Genomic context

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See LOC102692109 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_09 current fLepOcu1.hap2 (GCF_040954835.1) 20 NC_090715.1 (15332541..15434886, complement)
101 previous assembly LepOcu1 (GCF_000242695.1) Linkage Group LG23 NC_023201.1 (2538267..2697453)

Chromosome 20 - NC_090715.1Genomic Context describing neighboring genes Neighboring gene transcription initiation factor TFIID subunit 4-like Neighboring gene BTB/POZ domain-containing protein kctd15 Neighboring gene uncharacterized LOC107080017 Neighboring gene uncharacterized LOC107080015 Neighboring gene peptidase D Neighboring gene uncharacterized LOC107079993 Neighboring gene CCAAT enhancer binding protein gamma

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040954835.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLepOcu1.hap2

Genomic

  1. NC_090715.1 Reference fLepOcu1.hap2

    Range
    15332541..15434886 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_069181239.1 → XP_069037340.1  carbohydrate sulfotransferase 8

    UniProtKB/TrEMBL
    W5M1J6
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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