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ctbp2a C-terminal binding protein 2a [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102691079, updated on 23-Oct-2024

Summary

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Gene symbol
ctbp2a
Gene description
C-terminal binding protein 2a
See related
Ensembl:ENSLOCG00000007959
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Also known as
ctbp2
Orthologs
zebrafish all
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Genomic context

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See ctbp2a in Genome Data Viewer
Location:
chromosome: 4
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_09 current fLepOcu1.hap2 (GCF_040954835.1) 4 NC_090699.1 (26922855..27034508)
101 previous assembly LepOcu1 (GCF_000242695.1) Linkage Group LG5 NC_023183.1 (14056669..14168155)

Chromosome 4 - NC_090699.1Genomic Context describing neighboring genes Neighboring gene erythroid differentiation regulatory factor 1 Neighboring gene testis expressed 36 Neighboring gene ubiquitin thioesterase ZRANB1 Neighboring gene abraxas 2, BRISC complex subunit Neighboring gene 4-hydroxyphenylpyruvate dioxygenase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables NAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C-terminal-binding protein 2a
Names
C-terminal binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040954835.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLepOcu1.hap2

Genomic

  1. NC_090699.1 Reference fLepOcu1.hap2

    Range
    26922855..27034508
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006630413.3 → XP_006630476.1  C-terminal-binding protein 2a isoform X5

    UniProtKB/TrEMBL
    W5MMR5
    Related
    ENSLOCP00000009674.1
    Conserved Domains (2) summary
    COG0111
    Location:50 → 360
    SerA; Phosphoglycerate dehydrogenase or related dehydrogenase [Coenzyme transport and metabolism, General function prediction only]
    cd05299
    Location:34 → 352
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  2. XM_069189003.1 → XP_069045104.1  C-terminal-binding protein 2a isoform X8

  3. XM_015346809.2 → XP_015202295.1  C-terminal-binding protein 2a isoform X5

    UniProtKB/TrEMBL
    W5MMR5
    Conserved Domains (2) summary
    COG0111
    Location:50 → 360
    SerA; Phosphoglycerate dehydrogenase or related dehydrogenase [Coenzyme transport and metabolism, General function prediction only]
    cd05299
    Location:34 → 352
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  4. XM_015346807.2 → XP_015202293.2  C-terminal-binding protein 2a isoform X4

  5. XM_015346805.2 → XP_015202291.2  C-terminal-binding protein 2a isoform X2

  6. XM_015346806.2 → XP_015202292.2  C-terminal-binding protein 2a isoform X3

  7. XM_006630411.3 → XP_006630474.2  C-terminal-binding protein 2a isoform X1

  8. XM_015346810.2 → XP_015202296.1  C-terminal-binding protein 2a isoform X6

    Conserved Domains (2) summary
    COG0111
    Location:43 → 353
    SerA; Phosphoglycerate dehydrogenase or related dehydrogenase [Coenzyme transport and metabolism, General function prediction only]
    cd05299
    Location:27 → 345
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  9. XM_015346811.2 → XP_015202297.1  C-terminal-binding protein 2a isoform X7

    Conserved Domains (2) summary
    COG0111
    Location:38 → 348
    SerA; Phosphoglycerate dehydrogenase or related dehydrogenase [Coenzyme transport and metabolism, General function prediction only]
    cd05299
    Location:22 → 340
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor
Nucleotide Protein
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