U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

st3gal1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102689819, updated on 23-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
st3gal1
Gene description
ST3 beta-galactoside alpha-2,3-sialyltransferase 1
See related
Ensembl:ENSLOCG00000003647
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See st3gal1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_09 current fLepOcu1.hap2 (GCF_040954835.1) 10 NC_090705.1 (35818850..35869807)
101 previous assembly LepOcu1 (GCF_000242695.1) Linkage Group LG11 NC_023189.1 (7924427..7975564, complement)

Chromosome 10 - NC_090705.1Genomic Context describing neighboring genes Neighboring gene zinc finger and AT hook domain containing Neighboring gene fucolectin-1-like Neighboring gene regulation of nuclear pre-mRNA domain-containing protein 1A Neighboring gene glutathione S-transferase rho

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Integrative view of α2,3-sialyltransferases (ST3Gal) molecular and functional evolution in deuterostomes: significance of lineage-specific losses. Petit D, et al. Mol Biol Evol, 2015 Apr. PMID 25534026, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactoside (CMP) alpha-2,3-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ganglioside biosynthetic process via lactosylceramide IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sialylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1
Names
alpha2,3-sialyltransferase
NP_001305841.1
XP_006635715.2
XP_015212527.1
XP_015212528.1
XP_069050799.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001318912.1 → NP_001305841.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1

    Status: PROVISIONAL

    Source sequence(s)
    HG531985
    UniProtKB/TrEMBL
    A0A0F7RQ81, W5M7I7
    Conserved Domains (1) summary
    pfam00777
    Location:75 → 327
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

RefSeqs of Annotated Genomes: GCF_040954835.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLepOcu1.hap2

Genomic

  1. NC_090705.1 Reference fLepOcu1.hap2

    Range
    35818850..35869807
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_069194698.1 → XP_069050799.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 isoform X1

  2. XM_015357041.2 → XP_015212527.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 isoform X1

    Conserved Domains (1) summary
    pfam00777
    Location:89 → 342
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  3. XM_006635652.3 → XP_006635715.2  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    W5M7H6
    Related
    ENSLOCP00000004334.1
    Conserved Domains (1) summary
    pfam00777
    Location:40 → 293
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  4. XM_015357042.2 → XP_015212528.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 isoform X1

    Related
    ENSLOCP00000004345.1
    Conserved Domains (1) summary
    pfam00777
    Location:89 → 342
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.