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pomgnt1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102688386, updated on 21-Oct-2024

Summary

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Gene symbol
pomgnt1
Gene description
protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)
See related
Ensembl:ENSLOCG00000005707
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Orthologs
human zebrafish all
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Genomic context

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See pomgnt1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_09 current fLepOcu1.hap2 (GCF_040954835.1) 9 NC_090704.1 (15832821..15858830, complement)
101 previous assembly LepOcu1 (GCF_000242695.1) Linkage Group LG10 NC_023188.1 (8323404..8349388)

Chromosome 9 - NC_090704.1Genomic Context describing neighboring genes Neighboring gene phosphoinositide-3-kinase, regulatory subunit 3b (gamma) Neighboring gene tetraspanin-1 Neighboring gene uncharacterized LOC107078385 Neighboring gene leucine rich adaptor protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040954835.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLepOcu1.hap2

Genomic

  1. NC_090704.1 Reference fLepOcu1.hap2

    Range
    15832821..15858830 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015355688.2 → XP_015211174.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

    UniProtKB/TrEMBL
    W5MET3, W5MEV3
    Conserved Domains (2) summary
    cd02514
    Location:296 → 623
    GT13_GLCNAC-TI; GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides
    cd13937
    Location:94 → 241
    PANDER_GnT-1_2_like; PANDER-like domain of N-acetylglucosaminyltransferases

  2. XM_015355686.2 → XP_015211172.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

    UniProtKB/TrEMBL
    W5MET3, W5MEV3
    Related
    ENSLOCP00000006912.1
    Conserved Domains (2) summary
    cd02514
    Location:296 → 623
    GT13_GLCNAC-TI; GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides
    cd13937
    Location:94 → 241
    PANDER_GnT-1_2_like; PANDER-like domain of N-acetylglucosaminyltransferases

  3. XM_015355687.2 → XP_015211173.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

    UniProtKB/TrEMBL
    W5MET3, W5MEV3
    Conserved Domains (2) summary
    cd02514
    Location:296 → 623
    GT13_GLCNAC-TI; GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides
    cd13937
    Location:94 → 241
    PANDER_GnT-1_2_like; PANDER-like domain of N-acetylglucosaminyltransferases
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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