U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Gm15551 predicted gene 15551 [ Mus musculus (house mouse) ]

Gene ID: 102639086, updated on 26-Oct-2024

Summary

Go to the top of the page Help
Official Symbol
Gm15551provided by MGI
Official Full Name
predicted gene 15551provided by MGI
Primary source
MGI:MGI:3783000
See related
AllianceGenome:MGI:3783000
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in subcutaneous fat pad adult (RPKM 9.3), genital fat pad adult (RPKM 5.6) and 3 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Gm15551 in Genome Data Viewer
Location:
3 G1; 3 55.99 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (126460978..126462592, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (126667329..126668943, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_08932 Neighboring gene STARR-seq mESC enhancer starr_08933 Neighboring gene STARR-seq mESC enhancer starr_08934 Neighboring gene STARR-seq mESC enhancer starr_08935 Neighboring gene 40S ribosomal protein S28 pseudogene Neighboring gene predicted gene, 46823 Neighboring gene STARR-positive B cell enhancer mm9_chr3:126278818-126279119 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:126299066-126299249 Neighboring gene STARR-positive B cell enhancer ABC_E7941 Neighboring gene STARR-positive B cell enhancer ABC_E9570 Neighboring gene STARR-positive B cell enhancer ABC_E8805 Neighboring gene calcium/calmodulin-dependent protein kinase II, delta Neighboring gene STARR-positive B cell enhancer mm9_chr3:126393622-126393923 Neighboring gene STARR-positive B cell enhancer ABC_E9571 Neighboring gene VISTA enhancer mm1653 Neighboring gene STARR-positive B cell enhancer mm9_chr3:126454256-126454557 Neighboring gene STARR-positive B cell enhancer ABC_E11215 Neighboring gene STARR-positive B cell enhancer mm9_chr3:126474504-126474805 Neighboring gene STARR-positive B cell enhancer ABC_E11216 Neighboring gene STARR-seq mESC enhancer starr_08938 Neighboring gene STARR-seq mESC enhancer starr_08939 Neighboring gene STARR-positive B cell enhancer mm9_chr3:126606343-126606644 Neighboring gene STARR-seq mESC enhancer starr_08940 Neighboring gene STARR-seq mESC enhancer starr_08941 Neighboring gene ankyrin 2, brain Neighboring gene predicted gene, 25501 Neighboring gene STARR-seq mESC enhancer starr_08943 Neighboring gene predicted gene, 16958

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Comprehensive Transcriptional Profiling and Mouse Phenotyping Reveals Dispensable Role for Adipose Tissue Selective Long Noncoding RNA Gm15551. Engelhard CA, et al. Noncoding RNA, 2022 May 6. PMID 35645339, Free PMC Article
  2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

Go to the top of the page Help

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Go to the top of the page Help

Homology

Clone Names

  • AC110174.1

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_166466.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC110174

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    126460978..126462592 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials