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Krbox5 KRAB box domain containing 5 [ Mus musculus (house mouse) ]

Gene ID: 102637366, updated on 2-Nov-2024

Summary

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Official Symbol
Krbox5provided by MGI
Official Full Name
KRAB box domain containing 5provided by MGI
Primary source
MGI:MGI:3645096
See related
Ensembl:ENSMUSG00000058246 AllianceGenome:MGI:3645096
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm10037; EG328280; Rslcan24
Summary
Orthologous to several human genes including ZNF738 (zinc finger protein 738). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in testis adult (RPKM 1.3), frontal lobe adult (RPKM 1.1) and 18 other tissues See more
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Genomic context

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See Krbox5 in Genome Data Viewer
Location:
13 B3; 13 34.82 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (67979120..67992998)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (67830938..67844879)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930525G20 gene Neighboring gene ribosomal protein, large, P0 pseudogene Neighboring gene zinc finger protein 273 Neighboring gene STARR-seq mESC enhancer starr_34914 Neighboring gene cDNA sequence BC048507 Neighboring gene STARR-seq mESC enhancer starr_34916 Neighboring gene predicted gene 7969

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Expansion and diversification of KRAB zinc-finger genes within a cluster including Regulator of sex-limitation 1 and 2. Krebs CJ, et al. Genomics, 2005 Jun. PMID 15885501
  2. Regulator of sex-limitation (Rsl) encodes a pair of KRAB zinc-finger genes that control sexually dimorphic liver gene expression. Krebs CJ, et al. Genes Dev, 2003 Nov 1. PMID 14563677, Free PMC Article
  3. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
  4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC102637366
Names
regulator of sex-limitation candidate 24

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001309373.1 → NP_001296302.1  uncharacterized protein LOC102637366

    See identical proteins and their annotated locations for NP_001296302.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    CT030655
    Consensus CDS
    CCDS88477.1
    UniProtKB/TrEMBL
    A0A1Y7VMN9
    Related
    ENSMUSP00000152317.2, ENSMUST00000221620.2
    Conserved Domains (1) summary
    smart00349
    Location:2 → 58
    KRAB; krueppel associated box

  2. NM_001309374.1 → NP_001296303.1  uncharacterized protein LOC102637366

    See identical proteins and their annotated locations for NP_001296303.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    CT030194, CT030655
    Consensus CDS
    CCDS88477.1
    UniProtKB/TrEMBL
    A0A1Y7VMN9
    Related
    ENSMUSP00000152830.2, ENSMUST00000221266.2
    Conserved Domains (1) summary
    smart00349
    Location:2 → 58
    KRAB; krueppel associated box

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    67979120..67992998
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017315332.3 → XP_017170821.1  uncharacterized protein LOC102637366 isoform X1

    UniProtKB/TrEMBL
    A0A1Y7VMN9
    Conserved Domains (1) summary
    smart00349
    Location:2 → 58
    KRAB; krueppel associated box

  2. XM_017315334.1 → XP_017170823.1  uncharacterized protein LOC102637366 isoform X1

    UniProtKB/TrEMBL
    A0A1Y7VMN9
    Conserved Domains (1) summary
    smart00349
    Location:2 → 58
    KRAB; krueppel associated box

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001015506.1: Suppressed sequence

    Description
    NM_001015506.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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