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Gm6993 predicted gene 6993 [ Mus musculus (house mouse) ]

Gene ID: 102635514, updated on 17-Aug-2024

Summary

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Official Symbol
Gm6993provided by MGI
Official Full Name
predicted gene 6993provided by MGI
Primary source
MGI:MGI:3644833
See related
Ensembl:ENSMUSG00000112187 AllianceGenome:MGI:3644833
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG629667
Summary
Predicted to contribute to serine C-palmitoyltransferase activity. Predicted to be involved in ceramide biosynthetic process. Predicted to be part of serine C-palmitoyltransferase complex. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See Gm6993 in Genome Data Viewer
Location:
12 A2; 12 13.34 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (31290769..31290978)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (31240770..31240979)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 6030469F06 gene Neighboring gene STARR-seq mESC enhancer starr_31848 Neighboring gene ribosomal protein S7 pseudogene Neighboring gene STARR-seq mESC enhancer starr_31850 Neighboring gene predicted gene, 32899 Neighboring gene predicted gene, 24613 Neighboring gene laminin B1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
contributes_to serine C-palmitoyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of serine palmitoyltransferase complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
serine palmitoyltransferase small subunit A-like
Names
serine palmitoyltransferase small subunit A pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    31290769..31290978
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036157710.1 → XP_036013603.1  serine palmitoyltransferase small subunit A-like

    UniProtKB/TrEMBL
    A0A1W2P738
    Related
    ENSMUSP00000151468.2, ENSMUST00000219110.2
    Conserved Domains (1) summary
    pfam11779
    Location:9 → 61
    SPT_ssu-like; Small subunit of serine palmitoyltransferase-like
Nucleotide Protein
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Gene LinkOut

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